Package: RNOmni 1.0.1.4
RNOmni: Rank Normal Transformation Omnibus Test
Inverse normal transformation (INT) based genetic association testing. These tests are recommended for continuous traits with non-normally distributed residuals. INT-based tests robustly control the type I error in settings where standard linear regression does not, as when the residual distribution exhibits excess skew or kurtosis. Moreover, INT-based tests outperform standard linear regression in terms of power. These tests may be classified into two types. In direct INT (D-INT), the phenotype is itself transformed. In indirect INT (I-INT), phenotypic residuals are transformed. The omnibus test (O-INT) adaptively combines D-INT and I-INT into a single robust and statistically powerful approach. See McCaw ZR, Lane JM, Saxena R, Redline S, Lin X. "Operating characteristics of the rank-based inverse normal transformation for quantitative trait analysis in genome-wide association studies" <doi:10.1111/biom.13214>.
Authors:
RNOmni_1.0.1.4.tar.gz
RNOmni_1.0.1.4.zip(r-4.7)RNOmni_1.0.1.4.zip(r-4.6)RNOmni_1.0.1.4.zip(r-4.5)
RNOmni_1.0.1.4.tgz(r-4.6-x86_64)RNOmni_1.0.1.4.tgz(r-4.6-arm64)RNOmni_1.0.1.4.tgz(r-4.5-x86_64)RNOmni_1.0.1.4.tgz(r-4.5-arm64)
RNOmni_1.0.1.4.tar.gz(r-4.7-arm64)RNOmni_1.0.1.4.tar.gz(r-4.7-x86_64)RNOmni_1.0.1.4.tar.gz(r-4.6-arm64)RNOmni_1.0.1.4.tar.gz(r-4.6-x86_64)
RNOmni_1.0.1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
RNOmni/json (API)
NEWS
| # Install 'RNOmni' in R: |
| install.packages('RNOmni', repos = c('https://zrmacc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zrmacc/rnomni/issues
statistical-inferenceopenblascpp
Last updated from:abd120809a. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 123 | ||
| linux-devel-x86_64 | OK | 126 | ||
| source / vignettes | OK | 195 | ||
| linux-release-arm64 | OK | 125 | ||
| linux-release-x86_64 | OK | 131 | ||
| macos-release-arm64 | OK | 192 | ||
| macos-release-x86_64 | OK | 383 | ||
| macos-oldrel-arm64 | OK | 145 | ||
| macos-oldrel-x86_64 | OK | 415 | ||
| windows-devel | OK | 113 | ||
| windows-release | OK | 111 | ||
| windows-oldrel | OK | 101 | ||
| wasm-release | OK | 136 |
Exports:BATDINTFitOLSIINTOINTOmniPRankNorm
Dependencies:plyrRcppRcppArmadillo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| RNOmni: Rank normal transformation omnibus association test | RNOmni-package RNOmni |
| Basic Input Checks | BasicInputChecks |
| Basic Association Test | BAT |
| Convert Cauchy Random Variable to P | CauchyToP |
| Direct-INT | DINT |
| Ordinary least squares | FitOLS |
| Indirect-INT | IINT |
| Omnibus-INT | OINT |
| Omnibus P-value (Cauchy combination) | OmniP |
| Partition Data | PartitionData |
| Convert P-value to Cauchy Random | PtoCauchy |
| Rank-Normalize | RankNorm |
